|
|
This folder contains the code and data for the "Cell type directed design of synthetic enhancers" paper by Taskiran et al. |
|
|
It consists of 3 main folders: |
|
|
1. General folder contains the notebooks that show how we perform 3 different enhancer design strategies. |
|
|
2. Fly folder contains the notebooks that reproduce every fly enhancer analysis and figures in the paper. |
|
|
3. Human folder contains the notebooks that reproduce every human enhancer analysis and figures in the paper. |
|
|
It also includes the custom genome files for fly and human, where the synthetic enhancer are integrated. |
|
|
The deeplearning models, intermediate and resulting data files, and figure pdfs are provided in the Fly and Human folders. |
|
|
|
