BERLIN — A German court in Cologne ruled on Tuesday that circumcising young boys represents grievous bodily harm, a decision that could have significant repercussions for religious groups.

The president of the Central Council of Jews in Germany condemned the decision as “an unprecedented and dramatic intrusion on the self-determination of religious communities” and called on the German Parliament to pass legislation protecting circumcision as a religious practice.

The case centered on a 4-year-old boy whose Muslim parents had him circumcised by a doctor, which led to medical complications. Although both Muslims and Jews circumcise infant boys as a religious practice and many other people do so for health reasons, the court found that the child’s “fundamental right to bodily integrity” was more important than the parents’ rights.

According to the court, the religious freedom “would not be unduly impaired” because the child could later decide whether to have the circumcision.

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Millions of Muslims call Germany home, as do more than 100,000 Jews, as part of a community that has enjoyed a significant resurgence here. Since World War II, many Germans have been careful to consider Jewish sensitivities as a result of the horrible crimes committed against Jews during the Holocaust in the name of the German Reich.